Gemtractor: Extracting Views Into Genome-Scale Metabolic Models

Gemtractor: Extracting Views Into Genome-Scale Metabolic Models Publisher Pubmed

Scharm M¹ ; Wolkenhauer O^{1, 2} ; Jalili M³ ; Salehzadehyazdi A¹

Source: Bioinformatics Published:2020

Abstract

Computational metabolic models typically encode for graphs of species, reactions and enzymes. Comparing genome-scale models through topological analysis of multipartite graphs is challenging. However, in many practical cases it is not necessary to compare the full networks. The GEMtractor is a web-based tool to trim models encoded in SBML. It can be used to extract subnetworks, for example focusing on reaction-and enzyme-centric views into the model. © 2020 The Author(s). Published by Oxford University Press. All rights reserved.

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Experts (# of related papers)

Mahdi Jalili (3)

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Style	Citing Format
MLA	Scharm M, et al.. "Gemtractor: Extracting Views Into Genome-Scale Metabolic Models." Bioinformatics, vol. 36, no. 10, 2020, pp. 3281-3282.
APA	Scharm M, Wolkenhauer O, Jalili M, Salehzadehyazdi A (2020). Gemtractor: Extracting Views Into Genome-Scale Metabolic Models. Bioinformatics, 36(10), 3281-3282.
Chicago	Scharm M, Wolkenhauer O, Jalili M, Salehzadehyazdi A. "Gemtractor: Extracting Views Into Genome-Scale Metabolic Models." Bioinformatics 36, no. 10 (2020): 3281-3282.
Harvard	Scharm M et al. (2020) 'Gemtractor: Extracting Views Into Genome-Scale Metabolic Models', Bioinformatics, 36(10), pp. 3281-3282.
Vancouver	Scharm M, Wolkenhauer O, Jalili M, Salehzadehyazdi A. Gemtractor: Extracting Views Into Genome-Scale Metabolic Models. Bioinformatics. 2020;36(10):3281-3282.
BibTex	@article{ author = {Scharm M and Wolkenhauer O and Jalili M and Salehzadehyazdi A}, title = {Gemtractor: Extracting Views Into Genome-Scale Metabolic Models}, journal = {Bioinformatics}, volume = {36}, number = {10}, pages = {3281-3282}, year = {2020} }
RIS	TY - JOUR AU - Scharm M AU - Wolkenhauer O AU - Jalili M AU - Salehzadehyazdi A TI - Gemtractor: Extracting Views Into Genome-Scale Metabolic Models JO - Bioinformatics VL - 36 IS - 10 SP - 3281 EP - 3282 PY - 2020 ER -

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